Alternatively spliced transcripts that show opposite differential regulation compared to the primary transcript when treated by light compared with dark. Expression patterns of alternatively spliced transcripts for ten loci as indicated by 35 oligos. Log2 (light/dark) indicates the average ratio of log2 transformed spot intensities in the light divided by intensities in the dark for two technical replicates from four varieties (Nipponbare, IR24, Kitaake, and Taipei 309). Intensity in light_ and Intensity in dark_ followed by the cultivar name indicates the average normalized spot intensity for each cultivar in the light or dark, respectively (see “Methods”). Red boxes demarcate the data generated for Nipponbare. Light blue lines separate different gene loci. The data for the primary oligo, with the highest signal, are positioned at the top for each locus. Annotation indicates putative functions predicted for TIGR/RGAP version 5 gene models. Locus_id indicates the identifier of TIGR/RGAP version 5 gene model. NSF_Oligo id indicates the name of oligo sets in NSF45K array. The TIGR_gene_model column lists the TIGR/RGAP gene model identifiers for the putative transcripts recognized by each probe. We deduce based on the gene expression data that those gene models marked in bold are responsible for the signal for the given oligo probe. The data for this figure are provided in Table S2.