Table 2 Sequence Variations Detected Within the Hd6 Region Among Cultivated Varieties and Wild Rice Accessions
From: Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza
Speciesa | Variety or accession | Entire region (bp) | Exon (bp) | Intron (bp) | ||||
|---|---|---|---|---|---|---|---|---|
Length | Indel | Substitutionb | Length | Indelc | Substitution | |||
O. sativa ssp. indica | Kasalath | 5,178 | 1,002 | – | – | 4,176 | – | – |
93–11 | 5,176 | 1,002 | 0 | 0 | 4,174 | 7 (5) | 16 | |
Shuusoushu | 5,176 | 1,002 | 0 | 0 | 4,174 | 4 (3) | 5 | |
O. sativa ssp. japonica | Nipponbare | 5,176 | 1,002 | 0 | 1 (1) | 4,174 | 4 (3) | 15 |
Khau Mac Kho | 5,176 | 1,002 | 0 | 0 | 4,174 | 4 (3) | 15 | |
O. rufipogon | W0106 | 5,178 | 1,002 | 0 | 0 | 4,176 | 0 | 1 |
W0574 | 5,178 | 1,002 | 0 | 0 | 4,176 | 0 | 0 | |
W1943 | 5,176 | 1,002 | 0 | 0 | 4,174 | 4 (3) | 13 | |
O. glaberrima | IRGC104038 | 5,175 | 1,002 | 0 | 0 | 4,173 | 3 (2) | 9 |
O. barthii | W1588 | 5,182 | 1,002 | 0 | 0 | 4,180 | 6 (2) | 11 |
O. glumaepatula | IRGC105688 | 5,177 | 1,002 | 0 | 2 (1) | 4,175 | 3 (2) | 10 |
O. meridionalis | W1625 | 5,180 | 1,002 | 0 | 1 | 4,178 | 64 (16) | 59 |
O. longistaminata | W1413 | 5,119 | 1,002 | 0 | 3 | 4,117 | 173 (22) | 114 |
O. punctata | IRGC105690 | 5,137 | 1,002 | 0 | 10 | 4,135 | 557 (58) | 289 |
O. minuta (OM_Ba0079N19) | IRGC101141 | 5,125 | 1,002 | 0 | 10 | 4,123 | 547 (59) | 289 |
O. minuta (OM_Ba0144F13) | 5,253 | 1,002 | 0 | 8 | 4,251 | 361 (45) | 251 | |
O. officinalis | IRGC100896 | 5,245 | 1,002 | 0 | 10 (1) | 4,243 | 371 (45) | 249 |
O. alta | IRGC105143 | 6,741 | 1,002 | 0 | 20 | 5,739 | 1,925 (59) | 292 |
O. australiensis | W0008 | 5,741 | 1,002 | 0 | 18 (1) | 4,739 | 933 (55) | 323 |
O. brachyantha | IRGC101232 | 5,583 | 1,002 | 0 | 31 (1) | 4,581 | 1,499 (105) | 642 |
O. granulata | IRGC102118 | 6,049 | 1,002 | 0 | 30 | 5,047 | 1,869 (112) | 718 |