Species | # hits | Estimated LTRs copy # | % RS | Complete | s-LTRs | MBp | % genome |
---|
O. rufipogon
| 33 | 2762 | 0.85 | 460 | 1842 | 8743000 | 1.99 |
O. nivara
| 33 | 2417 | 0.86 | 403 | 1611 | 7655500 | 1.71 |
O. glaberrima
| 43 | 2110 | 0.79 | 352 | 1406 | 6685000 | 1.87 |
O. punctata
| 114 | 7956 | 2.48 | 1326 | 5304 | 25194000 | 5.93 |
O. officinalis
| 244 | 16293 | 3.47 | 2716 | 10861 | 51599500 | 7.93 |
O. minuta
| 484 | 28055 | 3.31 | 4676 | 18703 | 88842500 | 7.90 |
O. alta
| 456 | 26466 | 4.62 | 4411 | 17644 | 83809000 | 8.31 |
O. australiensis
| 326 | 22583 | 3.31 | 3764 | 15055 | 71514500 | 7.41 |
O. brachyantha
| 11 | 579 | 0.33 | 97 | 385 | 1838500 | 0.51 |
O. granulata
| 254 | 18578 | 2.45 | 3096 | 12386 | 58827000 | 6.67 |
O. coarctata
| 175 | 11500 | 1.25 | 1917 | 7666 | 36420000 | 2.84 |
O. ridleyi
| 332 | 20929 | 1.95 | 3488 | 13953 | 66273500 | 5.17 |
O. sativa
| 22 | 1426 | - | 285 | 856 | 4989000 | 1.28 |
- # hits is the number of significant hits obtained in BlastN searches using the LTRs as queries; “Estimated LTRs copy #” is the estimated copy number of Atlantys LTRs in that genome when the equation proposed by Hawkins et al. [17] was used; “% RS” is the percentage of base pairs in each random sheared library when Atlantys LTRs were used in a RepeatMasker search; “Complete” is the estimated number of complete Atlantys element in that genome (see text for details); “s-LTRs” is the estimated number of Atlantys solo-LTRs in that genome (see text for details); “Mbp” is the amount of complete and s-LTRs was translated into Mbp (see text for details); “% Genome” is the estimated percentage of each genome constituted by Atlantys elements. Values for O. sativa refer to the average of 10 samples of 3,000 pseudorandom sequences each generated from the O. sativa var. japonica complete genome sequence [20]