Table 1 General Features of Oryza Atlantys Elements
Species | Length | LTR5 | LTR3 | Insertion time | TSD | Accession number |
|---|---|---|---|---|---|---|
O. sativa japonica | 13,728 | 1–1512 | 12215–13728 | 0.93 | CCTGG | AP008212.1 (17105002–17118729) |
O. sativa indica | 13,472 | 1–1513 | 11959–13472 | 0.76 | GATTG | CM000136 (18570076–18583547) |
O. alta | 13,828 | 1–1746 | 12046–13828 | 0.45 | GTAAT | EU257654 |
O. alta (solo-LTR) | 1,833 | – | – | – | GCCGG | EU257662 |
O. officinalis | 11,921 | 1–1198 (T) | 10735–11921 | 0.75 | n/a | EU257656 |
O. punctata | 12,999 | 1–1524 | 11470–12999 | 0.55 | GCAGT | EU257657 |
O. granulata | 11,226 | 1–1338 | 9889–11226 | 0.99 | GGCTG | EU257655 |
O. australiensis (solo-LTR) | 1,457 | – | – | – | GCGGC | EU257663 |
O. glaberrima (joined-LTR) | 1,515 | – | – | – | – | EU257659 |
O. nivara (joined-LTR) | 1,514 | – | – | – | – | EU257660 |
O. rufipogon (joined-LTR) | 1,502 | – | – | – | – | EU257661 |
O. minuta (solo-LTR) | 1,490 | – | – | – | GTCAT | EU257658 |
O. ridleyi (solo-LTR) | 1,299 | – | – | – | GTATG | EU257664 |