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Table 2 List of known genes potentially related to allelopathy within 0.15 Mb distance interval from each QTL lead marker

From: Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study

Locus ID

Description

Gene symbol

QTL

Reference

Os05g0132700

R2R3-MYB TRANSCRIPTION FACTOR 52

2R_MYB52

4

 

Os02g0623400

G1 LIKE PROTEIN 3

G1L3

2

Sultana et al (2023), Fang et al. (2009)

Os02g0624300

R2R3-type MYB transcription factor

MYB30

2

 

Os02g0626100

Phenylalanine ammonia-lyase 1

OsPAL1

2

 

Os02g0626400

Phenylalanine ammonia-lyase

OsPAL

2

 

Os02g0626600

phenylalanine ammonia-lyase 3

OsPAL3

2

Sultana et al. (2023)

Os02g0627100

Phenylalanine ammonia-lyase 4

OsPAL4

2

 

Os02g0589000

Lecithin:cholesterol acyltransferase family protein

 

1

Sultana et al. (2023)

Os02g0589700

Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein

 

1

 

Os02g0590000

Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein

 

1

 

Os02g0590200

Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein

 

1

 

Os02g0590400

Lecithin:cholesterol acyltransferase family protein

 

1