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Rice

Table 1 List of lead-SNPs significantly associated with the barnyardgrass root growth inhibition (MLM, p-value < 10−4; GLM, p-value < 10−5)

From: Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study

QTL

Chr

Lead SNP position

MLM

GLM

p-value

Significant SNPs

Genomic interval

p-value

Significant SNPs

Genomic interval

qAll-2a

2

22.671.912

   

5.69E−06

1

 

qAll-2b

2

24.870.799

   

9.71E−07

3

64.115

qAll-3

3

22.755.757

7.71E−05

1

 

2.10E−07

1

 

qAll-5

5

1.843.023

2.80E−05

16

141.090

269E−07

20

194.608

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