Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

Rice

Table 5 The MQTLs with more than 10 initial QTLs, CI < 1 cM and a PVE average of the original QTLs > 10, which were considered as “Breeding MQTLs”

MQTL	Chr.	Position	CI (95%)	Mean CI of initial QTL	Mean variance of initial QTL (R²)	Initial QTL number	No. of study	Left marker	Right marker	Left position	Right position	Trait involved	Number of genes
MQTL2-8	2	139.66	0.01	2.93	27.10	10	4	RM213	RM208	34,652,409	35,135,926	BY, GY, HD, HI, PH, SF, PN	79
MQTL1-12	1	161.72	0.02	11.48	22.41	20	4	RM1387	S877A	40,206,787	40,362,513	BY, HD, GY, DRI, PH, PN	17
MQTL8-9	8	107.47	0.26	12.58	16.17	13	3	RM6976	R202	23,555,676	24,185,871	BY, GY, PH, PN	85
MQTL9-4	9	92.43	0.37	16.63	10.51	15	11	S4677S	RM5657	13,625,363	14,366,848	BY, CT, DRI, HD, DRI, PH, PN, SF, GY	71
MQTL1-5	1	105.35	0.56	12.78	13.36	54	21	C409	RG233	24,941,627	27,050,163	BY, CT, HD, FLZ, HI, DRI, PH, SF, PN	250
MQTL12-4	12	61.89	0.58	9.98	17.58	20	8	E4418S	C50732S	17,566,476	19,000,965	BY, HD, GY, HI, DRI, PN, SF, PH	76
MQTL3-5	3	45.16	0.64	2.39	26.72	28	4	RG409	RM489	3,475,375	4,333,835	BY, CT, HD, GY, HI,	147
MQTL6-3	6	16.78	0.77	8.29	10.84	56	8	RM204	RM225	3,168,461	3,416,631	BY, HD, FLZ, HI, PH, PN, SF	43
MQTL1-6	1	108.44	0.77	6.79	12.64	27	8	C808	RM3475	25,637,999	26,041,116	BY, DRI, HD, GY, PN, SF, PH	44
MQTL12-2	12	55.40	0.93	5.34	17.56	11	6	S13126S	S10043S	15,120,656	15,327,972	GY, HI, DRI, BY, PH	9
MQTL1-11	1	152.22	0.94	8.76	17.17	12	5	RM6696	S2523	38,220,799	38,511,992	DRI, GY, HI, PH, SF	52
MQTL3-6	3	46.51	0.97	1.55	33.80	10	2	RM6496	R1690	10,141,494	10,424,161	BY, CT, GY, PH, PN	50
MQTL8-4	8	65.80	0.98	14.75	13.37	22	12	E3835S	E40306S	9,432,624	10,286,626	BY, CT, GY, HD, DRI, PN, SF	44