Skip to main content
Rice

Table 4 Summary of the identified general MQTLs for yield components and drought tolerance associated traits under drought stress in rice

From: Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

MQTL

Chr.

Position

CI (95%)

Mean CI of initial QTL

Mean variance of initial QTL (R2)

Initial QTL number

No. of study

Left marker

Right marker

Left position

Right position

Trait involved

Number of genes

MQTL1-1

1

7.80

1.50

6.32

15.39

5

4

RM1282

C1679

548,711

1,171,021

BY, GY, PH, SF

114

MQTL1-2

1

18.34

5.76

21.39

6.15

6

3

C804

RM3426

3,099,744

4,051,819

GY, PH, PN

135

MQTL1-3

1

36.59

9.00

29.67

6.76

8

8

RM7086

RM8142

6,192,801

7,457,624

BY, GY, HI, PH

175

MQTL1-4

1

75.26

0.40

6.50

10.59

4

2

RM6681

C585

15,898,001

17,584,841

GY

83

MQTL1-5

1

105.35

0.56

12.78

13.36

54

21

C409

RG233

24,941,627

27,050,163

BY, CT, HD, FLZ, HI, DRI, PH, SF, PN

250

MQTL1-6

1

108.44

0.77

6.79

12.64

27

8

C808

RM3475

25,637,999

26,041,116

BY, DRI, HD, GY, PN, SF, PH

44

MQTL1-7

1

114.79

1.58

5.62

25.66

8

4

C10728S

S1457

26,884,639

27,084,363

HD, DRI, PH

24

MQTL1-8

1

129.93

1.26

9.83

16.86

26

14

RM7643

RM8096

31,138,070

31,363,367

BY, HD, GY, DRI, PH, PN

30

MQTL1-9

1

137.96

2.24

4.56

14.77

3

1

R655

C11234S

32,597,267

34,148,691

GY

233

MQTL1-10

1

142.12

1.37

3.35

30.30

3

1

RM5811

R836

34,635,439

35,624,461

GY, PH

139

MQTL1-11

1

152.22

0.94

8.76

17.17

12

5

RM6696

S2523

38,220,799

38,511,992

DRI, GY, HI, PH, SF

52

MQTL1-12

1

161.72

0.02

11.48

22.41

20

4

RM1387

S877A

40,206,787

40,362,513

BY, HD, GY, DRI, PH, PN

17

MQTL2-1

2

30.80

1.11

10.00

11.86

27

16

RM6247

C365

5,797,995

6,586,865

BY, CT, DRI, FLZ, GY, PH, PN, SF

105

MQTL2-2

2

51.74

3.94

18.42

6.70

17

12

G1340

RM300

10,425,113

13,191,461

BY, DRI, FLZ, GY, PH, SF, PN

214

MQTL2-3

2

67.85

4.25

12.98

9.14

6

4

RM7413

E30251S

18,452,888

19,879,123

FLZ, GY, PH, PN

156

MQTL2-4

2

89.05

3.86

7.81

12.89

2

2

R3041

R1424

21,924,973

22,816,467

HD, GY

125

MQTL2-5

2

108.78

1.73

10.33

6.83

24

10

RM7245

RM6366

26,443,082

26,965,400

HD, FLZ, HI, DRI, SF, PN

70

MQTL2-6

2

120.6

1.73

13.19

8.26

27

14

RM6122

CDO686

28,429,802

30,916,361

BY, CT, DRI, HD, GY, HI, FLZ, PH, PN, SF

368

MQTL2-7

2

133.23

0.83

11.13

13.36

9

6

Lsi1

RM6519

31,262,234

33,828,030

BY, FLZ, GY, PN, SF

371

MQTL2-8

2

139.66

0.01

2.93

27.10

10

4

RM213

RM208

34,652,409

35,135,926

BY, GY, HD, HI, PH, SF, PN

79

MQTL3-1

3

4.83

0.62

8.12

20.80

7

4

C51477S

S12021

1,012,713

1,269,836

DRI, PH

32

MQTL3-2

3

14.4

1.84

11.11

7.65

11

2

RM6301

E60866S

2,651,426

3,658,280

HD, GY, DRI, BY

180

MQTL3-3

3

20.0

0.84

1.46

31.00

9

3

RM4352

RM3195

4,314,114

4,481,736

BY, FLZ, GY, PH, SF

32

MQTL3-4

3

25.43

5.53

7.57

8.32

10

2

RM6038

RM5755

4,828,438

5,958,909

BY, GY, FLZ, DRI, PH, SF

178

MQTL3-5

3

45.16

0.64

2.39

26.72

28

4

RG409

RM489

3,475,375

4,333,835

BY, CT, HD, GY, HI,

147

MQTL3-6

3

46.51

0.97

1.55

33.80

10

2

RM6496

R1690

10,141,494

10,424,161

BY, CT, GY, PH, PN

50

MQTL3-7

3

47.66

0.33

11.81

15.33

59

18

S804

S1828

10,444,810

10,809,230

HD

53

MQTL3-8

3

61.64

5.86

8.53

10.49

2

2

RM5928

RM6594

12,574,977

14,096,202

GY, SF

151

MQTL3-9

3

70.50

0.29

9.77

11.90

6

4

R2982

C11260S

15,212,945

15,471,990

BY, HD, GY, HI, BY

18

MQTL3-10

3

91.14

1.85

8.88

17.16

2

4

L481

RZ403

22,816,752

23,088,637

BY, GY

25

MQTL3-11

3

98.53

1.65

12.16

11.10

9

5

R19

R250

24,595,174

25,117,296

BY, DRI, HD, FLZ, GY, HI, PH

59

MQTL3-12

3

103.71

4.21

12.86

7.79

6

2

RZ761

RM468

29,923,232

32,675,044

DRI, PH

454

MQTL3-13

3

125.62

1.44

24.38

9.20

7

6

C1351

RM1350

28,351,568

28,676,461

HD, GY, DRI, PH

37

MQTL4-1

4

24.05

1.50

13.42

13.44

14

11

V145

C10543S

13,694,349

14,669,542

BY, DRI, HD, FLZ, GY, PH, SF

51

MQTL4-2

4

41.67

2.59

11.18

12.52

6

4

C12216S

E61747S

18,391,172

18,674,598

GY, DRI, PN

28

MQTL4-3

4

50.66

3.27

8.57

14.93

8

3

S10644

C975

19,053,076

19,733,943

BY, DRI, PN

72

MQTL4-4

4

61.82

4.78

14.39

7.45

12

4

RM3397

RM3337

20,452,466

21,732,917

BY, GY, HI

146

MQTL4-5

4

69.62

2.76

12.22

12.26

10

6

RM3524

C12247S

22,708,799

23,187,177

BY, CT, GY, HD, PN, SF

86

MQTL4-6

4

86.49

3.12

8.33

16.09

7

3

RM5714

RM451

27,286,876

28,386,220

HD, PH, PN, SF

153

MQTL4-7

4

94.34

3.92

12.02

9.87

11

7

RM303

C79

28,574,911

29,304,018

BY, CT, FLZ, PN, SF

87

MQTL4-8

4

105.92

2.12

16.40

12.78

33

12

RG329

RM1100

30,853,328

31,442,408

BY, FLZ, GY, HD, DRI, PH, PN, SF

104

MQTL4-9

4

134.96

1.03

6.99

12.60

3

1

RM6303

G177

35,112,751

35,502,694

GY, PN, SF

62

MQTL5-1

5

7.35

2.52

3.57

10.50

2

1

RM5693

S1548

463,910

742,277

HD

45

MQTL5-2

5

30.97

2.53

12.00

11.06

9

7

S12447

C61983S

3,500,388

4,331,034

BY, HD, GY, DRI, PH, BY, SF

90

MQTL5-3

5

51.28

5.36

11.94

12.25

4

3

RM7293

RM3381

7,526,843

9,585,978

BY, GY, PN

125

MQTL5-4

5

66.06

3.29

16.28

9.69

5

4

E2801S

RM6024

16,960,667

17,752,315

CT, GY, DRI, PN

77

MQTL5-5

5

74.27

2.02

15.99

13.23

21

7

RM430

RZ649

18,691,482

19,545,619

BY, DRI, HD, FLZ, GY, PN

99

MQTL5-6

5

83.68

2.49

11.91

9.44

7

7

R1320

C308

20,744,914

21,135,716

HD, FLZ, DRI, PH, SF

49

MQTL5-7

5

109.82

2.75

16.28

10.94

5

3

RM3790

RM6952

26,195,524

27,321,197

PH, SF, BY

186

MQTL6-1

6

8.93

2.08

7.50

14.13

10

4

RM588

C688

1,611,462

2,198,480

BY, HD, GY, HI, DRI, PH, PN

105

MQTL6-2

6

13.53

0.97

3.38

19.78

4

1

RM8125

AID1

3,168,470

4,016,646

HD, GY

142

MQTL6-3

6

16.78

0.77

8.29

10.84

56

8

RM204

RM225

3,168,461

3,416,631

BY, HD, FLZ, HI, PH, PN, SF

43

MQTL6-4

6

21.94

0.05

3.26

30.04

8

1

RZ450

RM314

4,212,619

4,845,268

HD, GY, HI, DRI, PN

90

MQTL6-5

6

33.52

8.86

18.03

7.96

3

3

RG213

C1478

6,283,659

6,822,392

GY, PH, BY

73

MQTL6-6

6

57.77

2.76

22.70

10.33

18

10

C235

RM527

9,282,848

9,874,178

HD, GY, PH, BY

33

MQTL6-7

6

67.45

4.29

10.29

9.34

6

4

C288B

RM275

18,498,356

23,942,122

FLZ, GY, HI, PN, SF, HD

438

MQTL6-8

6

74.16

2.08

6.55

12.00

2

2

RM3187

G2028

20,579,037

22,609,459

GY, DRI

190

MQTL6-9

6

91.65

2.50

13.60

8.81

15

7

RM5957

RM8239

24,138,957

24,555,015

CT, DRI, GY, HI, PH, SF, BY

64

MQTL6-10

6

107.13

1.52

13.29

10.54

6

4

E4392S

RM400

27,377,223

28,431,750

BY, DRI, HD, PH, BY

137

MQTL7-1

7

49.22

2.76

15.11

7.67

16

9

S21852S

RG30

8,333,742

12,786,724

CT, GY, HD, DRI, FLZ, PH, SF, PN

210

MQTL7-2

7

62.89

4.44

12.26

8.81

3

2

G20

RM432

17,526,630

18,958,690

GY

123

MQTL7-3

7

70.36

2.84

14.52

7.40

11

5

RM11

RM3826

19,256,977

20,807,448

BY, CT, HD, GY

155

MQTL7-4

7

89.75

1.68

17.21

10.13

14

9

E3930S

RM3589

24,809,203

25,107,169

HD, GY, DRI, PN, SF

34

MQTL7-5

7

99.58

0.04

7.45

24.20

2

2

RM5455

R2358

26,461,046

26,637,818

FLZ, HI

26

MQTL8-1

8

18.91

2.27

12.16

12.96

12

8

R3786

RZ143

680,624

1,527,864

HD, GY, PN, SF, PH, BY

117

MQTL8-2

8

48.87

3.69

16.18

10.60

5

3

RM3231

S1850A

3,838,208

4,999,051

GY, HD

112

MQTL8-3

8

60.50

2.40

3.49

13.00

2

1

RM3181

RM6429

7,552,919

8,384,391

HD

76

MQTL8-4

8

65.80

0.98

14.75

13.37

22

12

E3835S

E40306S

9,432,624

10,286,626

BY, CT, GY, HD, DRI, PN, SF

44

MQTL8-5

8

68.45

3.70

5.82

18.45

2

1

RM331

RM7027

12,294,440

15,844,928

GY,

160

MQTL8-6

8

80.01

1.74

7.29

18.36

11

6

RM3689

R727

18,818,894

19,337,282

CT, DRI, GY, PH, BY

43

MQTL8-7

8

84.31

1.52

4.85

15.82

4

3

RM8264

RM1109

19,833,287

20,483,338

GY, BY

63

MQTL8-8

8

91.42

1.76

11.44

10.55

26

14

RM7049

RG1

20,812,460

21,647,205

CT, DRI, HD, GY, HI, PH, PN, SF

92

MQTL8-9

8

107.47

0.26

12.58

16.17

13

3

RM6976

R202

23,555,676

24,185,871

BY, GY, PH, PN

85

MQTL9-1

9

47.81

1.39

14.45

12.12

26

9

RM8206

R10783S

5,919,594

6,387,633

BY, HD, FLZ, GY, HI, DRI, PH, SF

29

MQTL9-2

9

69.99

1.31

10.71

9.27

9

6

RM409

RM566

14,372,099

14,704,835

GY, PH, PN

47

MQTL9-3

9

81.68

2.93

13.31

11.45

14

8

RM257

RM288

17,719,767

18,562,785

CT, GY, DRI, BY

124

MQTL9-4

9

92.43

0.37

16.63

10.51

15

11

S4677S

RM5657

13,625,363

14,366,848

BY, CT, DRI, HD, DRI, PH, PN, SF, GY

71

MQTL10-1

10

19.40

5.04

11.74

13.17

5

4

C63979S

S3578S

9,921,318

11,579,066

CT, HD, PH, PN

125

MQTL10-2

10

27.66

2.36

12.60

12.43

10

7

RM596

RZ625

15,209,035

16,620,262

BY, DRI, FLZ, GY, PH

138

MQTL10-3

10

33.45

1.87

6.81

12.17

8

5

C1633

Y1053R

15,135,545

16,067,185

HD, GY, DRI, BY, PN

113

MQTL10-4

10

40.01

5.41

12.18

9.46

5

5

Y1053L

C1286

16,345,398

17,134,742

BY, GY, PH, PN, SF

76

MQTL10-5

10

65.84

0.27

18.75

9.39

16

13

RM333

RM496

21,924,145

21,982,201

CT, HD, FLZ, GY, FLZ, HI, DRI, PH

13

MQTL11-1

11

16.71

1.74

14.43

11.66

5

2

R1938

RM1812

2,339,661

2,405,238

HD, GY

12

MQTL11-2

11

34.38

4.26

14.99

13.92

7

5

S20163S

S21074S

5,375,533

5,601,997

BY, GY, DRI, PN

23

MQTL11-3

11

49.58

3.27

12.91

14.57

7

5

RM479

S2137

7,692,852

8,296,761

HD, GY, DRI, PN, BY

55

MQTL11-4

11

60.10

3.80

6.61

19.67

3

2

RG247

E61044S

10,132,148

13,042,924

DRI, PN, BY

344

MQTL11-5

11

69.87

3.30

7.40

13.07

5

4

R10329S

RM457

18,333,609

19,064,898

GY, DRI, BY

46

MQTL11-6

11

76.66

1.81

4.67

21.82

4

2

G257

E60570

19,646,583

20,277,407

GY, PH

58

MQTL11-7

11

95.21

4.03

22.95

9.13

9

5

C189

R2458

23,734,008

24,909,396

CT, HD, GY, PH, SF, BY

94

MQTL11-8

11

113.29

0.94

9.64

11.20

3

3

L833

C61639

27,661,357

28,153,714

HD, PH, BY

42

MQTL12-1

12

46.82

2.92

9.09

12.71

5

5

RG869

C61563S

7,729,610

8,670,795

HD, GY, SF, BY

42

MQTL12-2

12

55.40

0.93

5.34

17.56

11

6

S13126S

S10043S

15,120,656

15,327,972

GY, HI, DRI, BY, PH

9

MQTL12-3

12

59.19

2.53

3.26

12.50

2

1

RM1261

S1436

16,344,411

17,531,220

HD, PN

38

MQTL12-4

12

61.89

0.58

9.98

17.58

20

8

E4418S

C50732S

17,566,476

19,000,965

BY, HD, GY, HI, DRI, PN, SF, PH

76

MQTL12-5

12

67.84

2.05

6.48

9.00

3

1

S21024S

CDO344

19,491,413

23,603,292

BY, HD, PH

344

MQTL12-6

12

90.89

0.24

12.48

15.26

8

7

RM7376

RM1103

23,443,538

23,606,725

DRI, FLZ, HD, PH, SF

27

Back to article page