Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

Daryani, Parisa; Amirbakhtiar, Nazanin; Soorni, Jahad; Loni, Fatemeh; Darzi Ramandi, Hadi; Shobbar, Zahra-Sadat

doi:10.1186/s12284-024-00684-1

Rice

Table 1 Brief of the QTL mapping studies used in meta-analysis of the QTLs for yield components and drought tolerance-associated traits in rice

From: Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

No	Parents of population	Population size	Genotyping method	Population type	Number of initial QTL under drought stress	References
1	M23 × TC189	100	SSR	F₂	26	Lin et al. (2007)
2	Basmati × IR55419-04	418	SSR	F₂	12	Sabar et al. (2019)
3	CT9993 × IR62266	154	SSR, AFLP, RFLP	DH	78	Lanceras et al. (2004)
4	IR64 × Apo	50	SSR	BILs	3	Baghyalakshmi et al. (2016)
5	Zhenshan 97 × IRAT109	180	SSR	RILs	47	Yue et al. (2006)
6	N22 × Swarna, N22 × IR64, N22 × MTU1010	292, 289, 362	SSR	BSA	22	Vikram et al. (2011)
7	CR 143-2-2xKrishnahamsa	190	SSR	RILs	12	Barik et al. (2019)
8	VandanaxWay Rarem	126	SSR	F₃	39	Bernier et al. (2007)
9	XiaobaijingzixKongyu131	220	SSR	RILs (F_2:7)	13	Xing et al. (2014)
10	Swarna × WAB 450	188	SSR	BILs (BC₁F₆)	10	Sangodele et al. (2014)
11	Akihikari × IRAT109	106	SSR	BILs (BC₁F₁)	5	Kato et al. (2008)
12	Cocodrie × Vandana	187	SNP, SSR	F_2:3	6	Solis et al. (2018)
13	Moroberekan × Swarna	260	SNP	BC₂F₃	47	Dixit et al. (2015)
14	Anbarbu × Spidroud	96	SSR	RILs	8	Sabouri et al. (2013)
15	Kali Aus × IR64, Kali Aus × MTU1010	300	SSR	BSA	7	Palanog et al. (2014)
16	IR20 × Nootripathu	200	SSR	RILs	35	Prince et al. (2015)
17	Swarna × Dular, IR11N121 × Aus196	350	SNP	BC₁F₃	41	Yadav et al. (2019)
18	Swarna × WAB450-I-B-P-157-2-1	202	SSR	BIL(BC₁F₆)	28	Saikumar et al. (2014)
19	Zhenshan97B × IRAT109	105	SSR	NILs	4	Nie et al. (2015)
20	Danteshwari × Dagad deshi	162	SSR, HvSSR	RILs	27	Verma et al. (2014)
21	IR77298-5-6-B-18 × IR64, IR77298-5-6-B-18 × IR77298-5-6-B-11, IR77298-14-1-2 × IR64, IR77298-14-1-2-B-10 × IR64	487, 478, 457, 286, 485	SSR	BILs (BC₄F₃)	10	Swamy et al. (2013)
22	IR55419-04/2 × TDK1	365	SSR	BSA (BC₁F_3:4)	19	Dixit et al. (2014a)
23	Kali Aus/2 × MTU1010, KaliAus/2 × IR64	134, 109	SSR	BSA (BC₁F₄)	6	Sandhu et al. (2014)
24	Cocodrie × N22	181	SNP	RILs	21	Bhattarai and Subudhi (2018)
25	IR74371-46-1-1 × Sabitri	294	SSR	BILs	9	Mishra et al. (2013)
26	Apo × Swarna, Aday sel × IR64, Vandana × Way Rarem	490, 288, 180, 470	SSR	BC₁F₄, BC₄F₃, BC₂F₃, BC₃F₃	14	Dixit et al. (2012)
27	Cocodrie × N22	190	SSR, SNP	F_2:3	8	Dixit et al. (2012)
28	Swarna × Moroberekan	361	SNP	BC₂F₃	19	Dixit et al. (2014b)
29	Samgang × Nagdong	218	SSR, STS	DH	4	Kim et al. (2017)
30	Zhenshan97B × IRAT109	195	SSR	RILs	18	Liu et al. (2005)
31	Haogelao × Shennong265	94	SSR	RILs	31	Gu et al. (2014)
32	IR64 × Cabacu	154	SNP	RILs	11	Trijatmiko et al. (2014)
33	IR64 × Adaysel, Swarna × Apo, Vandana × Way Rarem	230	SSR	BC₁F₅	3	Shamsudin et al. (2016)
34	IR64 × MTU1010	119	SSR	BAC	12	Swamy et al. (2017)
35	N22 × Swarna, N22 × IR64, N22 × MTU1010	292, 289, 362	SNP	RILs	12	Vikram et al. (2011)
36	Norungan × IR62266	232	SSR	RILs	79	Suji et al. (2012)
37	Dongxiang × DXCWR	159	SSR	RILs	17	Tian et al. (2006)
38	Guichao2 × (0. sativa L. ssp. Indica)	135	SSR	BC₄F₄	12	Shao-Xia et al. (2006)
39	IRAT109 × Zhenshan 97	180	SSR	RILs	47	Yue et al. (2008)
40	IRAT109 × Zhenshan 97	181	SSR	RILs	41	Yue et al. (2005)
41	CT9993 × IR62266	154	SSR, AFLP, RFLP	DH	6	Babu et al. (2003)
42	IR64 × RAM 40 and RAM 90	513	SSR, STS	BC₂F₃	19	Bimpong et al. (2011)
43	CT9993-5-10-1-M × IR62266-42-6-2	154	SSR, AFLP, RFLP	DH	6	Chakraborty and Zeng 2011)
44	IR64 ×Azucena	135	RFLP, RAPD, Isozyme	DH	31	Courtois et al. (2000)
45	Swarna × Dhagaddeshi, IR64 × Dhagaddeshi	269	SSR	RILs (F_3:5)	7	Ghimire et al. (2012)
46	IR20 × Nootripathu	259	ISSR, RAPD, EST	RILs (F₈)	19	Michael Gomez et al. (2010)
47	Shennong265 × Haogelao	94	SSR	BILs (BC₃F₆)	9	Gu et al. (2012)
48	IR64 × Azucena	135	RFLP	DH	3	Hemamalini et al. (2000)
49	Zhenshan 97B × IRAT110	195	SSR	RILs (F₁₀)	9	Hu et al. (2009)
50	Bala × Azucena	176	SSR, AFLP,RFLP	RILs (F₆)	4	Khowaja and Price (2008)
51	CT9993-5-10-1-M × IR62266-42-6-2	105	SSR, AFLP, RFLP	DH	3	Kumar et al. (2007)
52	Bala × Azucena	205	SSR, AFLP, RFLP	RILs	21	Lafitte et al. (2004)
53	CT9993-5-10-1-M × IR62266-42-6-2	154	SSR, AFLP, RFLP	DH	36	Lanceras et al. (2004)
54	OM1490 × WAB880-1-38-18-20-P1-HB	229	SSR	BILs (BC₂F₂)	10	Lang et al. (2013)
55	Zhenshan 97B × IRAT109	187	SSR	RILs (F₁₀)	12	(Liu et al. 2008)
56	Gharib × Sepidroud	148	SSR	F_2:4	8	Mardani et al. (2013)
57	Maybelle × Baiyeqiu	251	SSR	DH	8	Qun et al. (2011)
58	IR62266-42-6-2 × IR60080-46-A	150	RFLP, SSR, Candidate genes	BILs	6	Robin et al. (2003)
59	Pusa Basmati1460 × MASARB 25, HKR47 × MAS26	94	SSR	RILs (F_2:3)	25	Sandhu et al. (2013)
60	IR64 × Kali, MTU1010 × Kali, Kali Aus/2 × MTU1010	300	SSR	BILs (BC₁F₄)	23	Sandhu et al. (2014)
61	CT9993-5-10-1-M × IR62266-42-6-2	135	SSR, AFLP, RFLP	DH	4	Sellamuthu et al. (2015)
62	CT9993-5-10-1-M × IR62266-42-6-2	154	SSR, AFLP, RFLP	DH	4	Srinivasan et al. (2008)
63	IR64 × Norungan and IR50 × Norungan	380	SSR	RILs (F₆)	28	Subashri et al. (2009)
64	Milyang 23 × Adhikari	126	SSR, RFLP	RILs	5	Takai et al. (2006)
65	IR64 × Azucena	91	SSR	DH	42	This et al. (2010)
66	IR64 × Azucena	165	SSR	RILs	32	This et al. (2010)
67	IR64 × IRAT177	154	SNP	RILs (F₆)	11	Trijatmiko et al. (2014)
68	IR64 × Azucena	90	SSR	DH	4	Venuprasad et al. (2009)
69	Swarna × Basmati 334	367	SSR	RILs (F_3:4)	8	Vikram et al. (2012)
70	MTU 1010 × N22	362	SSR	RILs (F_3:4)	2	Vikram et al. (2011)
71	IR 64 × Tarom molaei	72	SSR	BILs ( BC₂F₆)	29	Wang et al. (2013)
72	Teqing × Lemont	133	SSR	BILs	33	Xu et al. (2005)
73	Sabitri × IR77298-5-6-18	294	SSR	BILs	4	Yadaw et al. (2013)
74	Tequing × Lemont	254	SSR	BILs	24	Zhao et al. (2008)
75	Zhenshan 97B × IRAT109	180	SSR	RILs (F₁₀)	22	Zhou et al. (2011)
76	Zhenshan 97B × IRAT109	187	SSR	RILs (F₉)	14	Zou et al. (2005)

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