Fig. 3

Concentric circles indicate different features drawn in Circos (Krzywinski et al. 2009). a Genetic positions (cM) of rice chromosomes represented by bars. b Molecular markers density on rice chromosomes shown on a scale from white to orange to indicate the lowest to highest density. c Distribution of QTLs across the twelve rice chromosomes. d Genetic positions of MQTLs for each distinct trait with 95% CIs. e Heatmap illustrating the QTL-overview index, which is estimated by the frequency of QTLs for yield components and DT-associated traits on each 0.5-cM segment of the rice consensus map. f Genetic positions of inclusive MQTLs with 95% CIs. g Proportion of phenotypic variance explained (R²) by each QTL