Table 3 The 11 enriched biological processes in the GO enrichment analysis
Phenotype | Phenotype abbreviation | Direction of the association | GO ID | Description | # of genes with the tested annotation in the top 1% gene set | # of genes with an annotation in the top 1% gene set | # of genes with the tested annotation in the entire gene seta | # of genes with an annotation in the entire gene seta | P-value | FDR-adjusted P-value |
|---|---|---|---|---|---|---|---|---|---|---|
Crown root size | RS_C | Positive | GO:0006260 | DNA replication | 8 | 117 | 51 | 6051 | 4.89 × 10− 6 | 2.44 × 10− 4 |
Lateral root size | RS_L | Positive | GO:0006412 | Translation | 24 | 89 | 276 | 6051 | 5.49 × 10− 13 | 2.42 × 10− 11 |
Crown root diameter | RD_C | Positive | GO:0043086 | Negative regulation of catalytic activity | 3 | 69 | 16 | 6051 | 7.15 × 10− 4 | 2.50 × 10− 2 |
Crown root diameter | RD_C | Positive | GO:0006096 | Glycolysis | 4 | 69 | 45 | 6051 | 1.62 × 10− 3 | 2.84 × 10− 2 |
Crown root diameter | RD_C | Negative | GO:0009664 | Plant-type cell wall organization | 5 | 69 | 28 | 6051 | 1.34 × 10− 5 | 3.74 × 10− 4 |
Crown root diameter | RD_C | Negative | GO:0006979 | Response to oxidative stress | 6 | 69 | 70 | 6051 | 1.30 × 10− 4 | 1.82 × 10− 3 |
Lateral root diameter | RD_L | Negative | GO:0006457 | Protein folding | 10 | 56 | 139 | 6051 | 4.28 × 10− 7 | 9.41 × 10− 6 |
Lateral root diameter | RD_L | Negative | GO:0009408 | Response to heat | 3 | 56 | 10 | 6051 | 8.61 × 10− 5 | 9.47 × 10− 4 |
Lateral root diameter | RD_L | Negative | GO:0019538 | Protein metabolic process | 3 | 56 | 12 | 6051 | 1.56 × 10− 4 | 1.14 × 10− 3 |
Lateral root diameter | RD_L | Negative | GO:0006950 | Response to stress | 3 | 56 | 33 | 6051 | 3.37 × 10− 3 | 1.85 × 10− 2 |
The ratio of deep rooting | RDR | Positive | GO:0006310 | DNA recombination | 3 | 69 | 14 | 6051 | 4.72 × 10− 4 | 1.79 × 10− 2 |