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Rice
Fig. 2 | Rice

Fig. 2

From: Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice

Fig. 2

Relationship between OsENT1 and the GWAS peak SNP at 6,119,732 bp on chromosome 8. We searched for the most plausible candidate gene for the GWAS peak SNP at 6,119,732 based on the root transcriptome data. The WRC accessions with the alternative allele (thymine) at the GWAS peak SNP had (A) longer crown root length and (B) lower OsENT1 gene expression profile than those with the reference allele (adenine), respectively. (C) Histogram of the − logP values of the candidate genes around the peak SNP based on the ANOVA. (D) Scatter plot between OsENT1 gene expression profile and crown root length. The horizontal bars in the violin plots represent median value

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