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Table 1 Summary information of quantitative trait locus (QTLs) for the traits related with deep-water resistance detected by genome-wide association study

From: Identification of Genomic Regions for Deep-Water Resistance in Rice for Efficient Weed Control with Reduced Herbicide Use

QTL

Trait

Year

Chromosome

Start (Mbp)

End (Mbp)

−Log10(p)

qPL2

PLSW + 3 DAT

PLSW + 10,24 DAT

2020

2021

2

6.0

14.0

5.41

qPL3

PLDW + 3,10,17 DAT

PLDW + 24 DAT

2020

2021

3

32.5

36.5

5.70

qPL5

PLDW + 24 DAT

2021

5

4.0

8.0

5.52

qPL12

PLDW + 3 DAT

PLSW + 3,10,17 DAT

2021

2020

12

22.0

Terminus

5.70

qTN1

TNSW + 17 DAT

2021

1

11.0

25.0

5.33

qTN4

TNDW + 34 DAT

TNDW + 33 DAT

TNSW + 34 DAT

2020

2021

2020

4

28.0

34.0

8.62

qTN5

TNSW + 33 DAT

2021

5

25.0

Terminus

5.84

qTN10

TNDW + 34 DAT

2020

10

9.0

13.0

5.38

  1. PL: plant length, TN: tiller number, DAT: days after treatment, SW: shallow-water, DW: deep-water