Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress Responsive Genes in Rice

Rice

Table 1 Summary of transcriptome data obtained for low nitrogen (N) and water stress response studies in a pair of rice genotypes, IR 64 and Nagina 22 (N22)

Treatment	Library	Number of raw reads	Number of high quality (HQ)	% of HQ reads	Mapping % of HQ reads
A: Optimal N and water (N + W+)	IR64R	66,536,324	50,191,956	75.45	88.81
A: Optimal N and water (N + W+)	IR64S	70,824,528	55,136,806	77.85	91.98
B: Low N and optimal water (N-W+)	IR64R	82,505,318	79,630,496	96.52	84.57
B: Low N and optimal water (N-W+)	IR64S	80,815,020	75,536,524	93.47	92.84
C: Optimal N and low water (N + W-)	IR64R	71,789,678	65,991,386	91.92	93.66
C: Optimal N and low water (N + W-)	IR64S	59,320,262	54,086,464	91.18	92.58
D: Low N and low water (N-W-)	IR64R	83,704,236	78,718,332	94.04	92.58
D: Low N and low water (N-W-)	IR64S	43,945,150	38,574,194	87.78	92.8
A: Optimal N and water (N + W+)	N22R	85,535,858	78,152,624	91.37	93.98
A: Optimal N and water (N + W+)	N22S	80,808,216	74,622,520	92.35	83.15
B: Low N and optimal water (N-W+)	N22R	80,715,748	76,311,074	94.54	94.04
B: Low N and optimal water (N-W+)	N22S	64,090,592	62,037,382	96.80	84.51
C: Optimal N and low water (N + W-)	N22R	68,228,978	64,247,540	94.16	92.72
C: Optimal N and low water (N + W-)	N22S	72,947,448	67,688,471	92.79	80.84
D: Low N and low water (N-W-)	N22R	76,438,072	72,888,018	95.36	91.01
D: Low N and low water (N-W-)	N22S	73,075,028	70,427,288	96.38	88.51
Total reads		1,161,280,456	1,064,241,075	91.37	89.91
Average reads per library		72,580,028.5	66,515,067.19	91.37	89.91