Asian panel | Malagasy panel | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Population | N | Gene diversity | Distancea (kb) for r2 ≤ 0.2 | Genetic differentiation between subpopulations estimated by FST statistic | |||||||||||||
indica | XI-1A | XI-1B | XI-2 | XI-3 | cAus | japonica | GJ- trop | GJ-sbtrop | GJ-temp | cBas | G1 | Gm | G6 | ||||
Indica (XI) | 1139 | 0.19 ± 0.09 | 75–100 | ||||||||||||||
- XI-1A | 178 | 0.13 ± 0.06 | 250–300 | 0.00 | |||||||||||||
- XI-1B | 49 | 0.15 ± 0.07 | 250–300 | 0.25 | 0.00 | ||||||||||||
- XI-2 | 179 | 0.18 ± 0.08 | 125–150 | 0.23 | 0.17 | 0.00 | |||||||||||
- XI-3 | 392 | 0.16 ± 0.06 | 125–150 | 0.25 | 0.18 | 0.15 | 0.00 | ||||||||||
cAus | 169 | 0.16 ± 0.08 | 200–250 | 0.42 | 0.53 | 0.49 | 0.42 | 0.49 | 0.00 | 0.73 | |||||||
japonica (GJ) | 495 | 0.11 ± 0.04 | 350–400 | 0.66 | |||||||||||||
- GJ-trop | 210 | 0.09 ± 0.04 | 500–600 | 0.74 | 0.74 | 0.68 | 0.68 | 0.70 | 0.00 | ||||||||
- GJ-sbtrop | 105 | 0.05 ± 0.02 | 700–800 | 0.76 | 0.78 | 0.69 | 0.69 | 0.71 | 0.25 | 0.00 | |||||||
- GJ-temp | 150 | 0.03 ± 0.01 | 700–800 | 0.79 | 0.83 | 0.72 | 0.71 | 0.75 | 0.30 | 0.43 | 0.00 | ||||||
cBas | 62 | 0.12 ± 0.06 | 500–600 | 0.54 | 0.65 | 0.62 | 0.56 | 0.59 | 0.56 | 0.51 | 0.48 | 0.56 | 0.64 | 0.00 | |||
G1 | 156 | 0.14 ± 0.09 | 125–150 | 0.07 | 0.14 | 0.14 | 0.11 | 0.16 | 0.44 | 0.73 | 0.69 | 0.70 | 0.74 | 0.56 | 0.00 | ||
Gm | 220 | 0.09 ± 0.05 | 600–700 | 0.42 | 0.57 | 0.58 | 0.41 | 0.52 | 0.55 | 0.78 | 0.77 | 0.80 | 0.82 | 0.70 | 0.46 | 0.00 | |
G6 | 45 | 0.10 ± 0.05 | 1250–1500 | 0.66 | 0.70 | 0.69 | 0.63 | 0.65 | 0.64 | 0.17 | 0.13 | 0.34 | 0.43 | 0.46 | 0.62 | 0.75 | 0.00 |