Table 2 Gene annotation of NBS-LRR gene which located in the genomic intervals of QTL1 and QTL11 of JHN using Nipponbare reference sequence
QTL | Chromosome | Chromosomal location of genomic interval (bp) | Annotation of NBS-LRR genes | Allelic genes | References | |
|---|---|---|---|---|---|---|
NBS-LRR gene model | Chromosomal location (bp) | |||||
QTL1 | 1 | 33,054,867-33,678,804 | LOC_Os01g57270 | 33,091,703 – 33,096,363 | NA |  |
|  |  |  | LOC_Os01g57280 | 33,099,464 – 33,103,906 | Pi64 | Ma et al. 2015 |
|  |  |  | LOC_Os01g57310 | 33,116,117 – 33,124,371 | Pi37 | Lin et al. 2007 |
|  |  |  | LOC_Os01g57340 | 33,141,127 – 33,145,609 | Pish/Pi35 | |
|  |  |  | LOC_Os01g57870 | 33,463,913 – 33,460,254 | NA |  |
QTL11 | 11 | 27,673,251-28,281,693 | LOC_Os11g45750.1 | 27,695,070 – 27,683,753 | NA |  |
|  |  |  | XM_015761791.1 | 27,692,238 – 27,694,418 | NA |  |
|  |  |  | LOC_Os11g45790 | 27,707,310 – 27,703,761 | NA |  |
|  |  |  | LOC_Os11g45930 | 27,793,777 – 27,797,821 | NA |  |
|  |  |  | LOC_Os11g45970 | 27,812,251 – 27,818,431 | NA |  |
|  |  |  | NP_001068480.1 | 27,821,921 – 27,824,507 | NA |  |
|  |  |  | XM_015760098.1 | 27,885,376 – 27,886,175 | NA |  |
|  |  |  | LOC_Os11g46200.1 | 27,978,368 – 27,983,597 | Pik-1 alleles | Ashikawa et al. 2012 |
|  |  |  | LOC_Os11g46210 | 27,984,697 – 27,989,134 | Pik-2 alleles | Ashikawa et al. 2012 |