From: Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions
Trait | QTL | Chr | Flanking markers | Source | QTL Cart. CIM | QTL Cart. IM | QGENE CIM | QGENE IM | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LOD | R2 | Add | LOD | R2 | Add | LOD | R2 | Add | LOD | R2 | Add | |||||
GW | qGW1.1 | 1 | 214137-id1007975 | C | 4.74 | 11.4 | −0.05 | 5.34 | 15.2 | −0.05 | 4.40 | 12.8 | 0.06 | 4.35 | 12.7 | 0.05 |
qGW2.1 | 2 | 1661393-1981019 | C | 3.29 | 6.5 | −0.04 | 4.21 | 12.2 | −0.05 | 3.13 | 9.3 | 0.04 | 3.14 | 9.3 | 0.04 | |
qGW2.1 | 2 | 2153125-2422788 | C |  |  |  |  |  |  | 2.74 | 8.2 | −0.04 |  |  |  | |
qGW5.1 | 5 | 5428382-ud5000983 | C | 2.39 | 5.0 | −0.03 | 3.60 | 10.5 | −0.04 | 2.51 | 7.5 | 0.04 | 3.13 | 9.3 | 0.04 | |
DTF | qDTF3.1 | 3 | 2499734-2519460 | C | 21.81 | 42.2 | −2.44 | 13.53 | 34.9 | −2.20 | 17.36 | 41.7 | 2.35 | 13.14 | 33.6 | 2.22 |
qDTF6.1 | 6 | id6015421-6906738 | I |  |  |  | 4.09 | 11.9 | 1.70 |  |  |  | 3.70 | 10.9 | −1.70 | |
qDTF10.1 | 10 | id10003608-10579252 | I | 5.70 | 9.0 | 1.13 | 2.99 | 8.8 | 1.11 | 5.43 | 15.5 | −1.18 |  |  |  | |
FLW | qFLW3.1 | 3 | 2499734-2519460 | C | 5.18 | 11.0 | −0.05 |  |  |  | 3.49 | 10.3 | 0.10 |  |  |  |
qFLW4.1 | 4 | 4683923-4728960 | C | 8.88 | 20.1 | −0.09 | 3.73 | 10.9 | −0.06 | 3.98 | 11.6 | 0.06 | 3.29 | 9.7 | 0.06 | |
qFLW5.1 | 5 | id5001564-id5003312 | C | 2.67 | 5.4 | −0.04 |  |  |  |  |  |  | 2.72 | 8.1 | −0.05 | |
qFLW12.1 | 12 | c12p5738988-id12005832 | I | 4.80 | 10.3 | 0.06 | Â | Â | Â | Â | Â | Â | Â | Â | Â | |
qFLW12.2 | 12 | 12740505-12939027 | C | 3.44 | 7.3 | −0.05 |  |  |  |  |  |  |  |  |  | |
FLL | qFLL1.1 | 1 | id1016971-1305247 | C | 3.81 | 25.2 | −1.79 |  |  |  |  |  |  |  |  |  |
qFLL2.1 | 2 | 1543608-1902547 | I | 3.00 | 6.8 | 0.96 | 2.97 | 8.8 | 1.06 | 3.85 | 11.3 | −1.19 | 3.54 | 10.4 | −1.17 | |
qFLL4.1 | 4 | id4002348-4253547 | I | 3.05 | 6.8 | 0.99 |  |  |  | 3.15 | 9.3 | −1.15 |  |  |  | |
qFLL5.1 | 5 | 5719825-5747652 | I | 3.90 | 9.1 | 1.12 | Â | Â | Â | Â | Â | Â | Â | Â | Â | |
GY | qGY12.1 | 12 | 12648838-12931835 | I | 3.39 | 9.2 | 247.20 |  |  |  | 2.27 | 6.8 | −206.30 |  |  |  |
HI | qHI3.1 | 3 | 2499734-2560888 | I | 3.50 | 8.0 | 0.02 |  |  |  | 4.91 | 14.2 | −0.03 | 2.25 | 6.7 | −0.02 |
qHI7.1 | 7 | id7002749-7730100 | C | Â | Â | Â | Â | Â | Â | 3.50 | 10.3 | 0.05 | Â | Â | Â | |
LSL1 | qLSL 1 1.1 | 1 | 275443-id1007975 | C | 4.37 | 9.8 | −0.78 | 3.18 | 9.4 | −0.77 |  |  |  |  |  |  |
qLSL 1 3.1 | 3 | fd9-2519460 | C | 5.33 | 13.1 | 0.93 | 3.78 | 11.0 | −0.82 | 3.95 | 11.6 | 0.83 | 3.23 | 9.6 | 0.76 | |
qLSL 1 5.1 | 5 | ud5000983-5747652 | I |  |  |  | 3.93 | 11.8 | 0.88 | 2.79 | 8.3 | −0.86 | 3.80 | 11.1 | 0.88 | |
LSL2 | qLSL 2 3.1 | 3 | id3003846-3236543 | C | 3.70 | 8.1 | −0.67 | 2.59 | 7.8 | −0.65 | 3.23 | 9.6 | 0.94 |  |  |  |
qLSL 2 5.1 | 5 | 5515384-id5013231 | I | 4.95 | 11.2 | 0.84 | 2.77 | 9.4 | 0.76 |  |  |  | 3.03 | 9.0 | −0.83 | |
qLSL 2 9.1 | 9 | 9592671-id9007287 | I | 4.33 | 16.8 | 0.97 | 2.84 | 17.6 | 0.99 | 4.45 | 12.9 | −1.59 | 3.29 | 9.7 | −1.45 | |
LSL3 | qLSL 3 2.1 | 2 | 1562092-id2007797 | C |  |  |  | 3.92 | 11.4 | −1.06 | 4.41 | 12.8 | 1.10 | 3.89 | 11.4 | 1.08 |
qLSL 3 3.1 | 3 | 2573346-2610698 | C | 2.63 | 4.1 | −0.69 | 3.60 | 10.5 | −1.03 | 4.40 | 12.8 | 1.24 | 3.18 | 9.4 | 1.03 | |
qLSL 3 5.1 | 5 | ud5000983-5747652 | I | 6.73 | 12.8 | 1.17 | 2.96 | 10.2 | 1.03 |  |  |  | 3.12 | 9.3 | −1.02 | |
qLSL 3 6.1 | 6 | 6619487-6816224 | C | 5.83 | 10.4 | −1.10 |  |  |  |  |  |  |  |  |  | |
qLSL 3 8.1 | 8 | 8803052-9049928 | I | 7.41 | 14.7 | 1.29 | 4.18 | 22.1 | 1.49 | 6.24 | 17.6 | −2.47 | 5.59 | 16.0 | −2.38 | |
qLSL 3 11.1 | 11 | id11007523-11608239 | C | 5.22 | 9.3 | −0.95 | 3.40 | 10.0 | −0.97 | 4.03 | 11.8 | 1.19 | 3.69 | 10.9 | 1.05 | |
SER | qSER5.1 | 5 | 5515384-id5013231 | I | 8.10 | 20.0 | 0.08 | 6.53 | 20.0 | 0.08 | 3.02 | 9.0 | −0.06 | 7.08 | 19.8 | 0.09 |
qSER6.1 | 6 | 6585321-6816224 | C | 3.70 | 8.0 | −0.05 |  |  |  |  |  |  |  |  |  | |
PH | qPH1.1 | 1 | 197232-id1007975 | C |  |  |  | 3.13 | 10.2 | −2.38 |  |  |  | 2.55 | 7.6 | 2.09 |
qPH3.1 | 3 | 2519460-id3002805 | C | 3.15 | 7.0 | −1.96 |  |  |  | 3.12 | 9.3 | 2.31 |  |  |  | |
qPH5.1 | 5 | ud5000983-5747652 | I | 9.90 | 23.9 | 3.71 | 8.22 | 22.4 | 3.57 | 3.98 | 11.7 | −2.99 | 7.62 | 21.1 | −3.58 | |
TN | qTN3.1 | 3 | 2519460-id3003846 | I | 3.31 | 9.3 | 0.41 | 3.85 | 11.7 | 0.45 | 3.64 | 10.7 | −0.49 | 4.29 | 12.5 | −0.49 |
PL | qPL1.1 | 1 | id1015390-id1016971 | C | 3.51 | 6.7 | −0.44 |  |  |  |  |  |  |  |  |  |
qPL2.1 | 2 | 1529216-1845605 | I | 7.11 | 14.3 | 0.66 | 4.66 | 13.4 | 0.60 | 4.80 | 13.9 | −0.62 | 4.59 | 13.3 | −0.61 | |
qPL6.1 | 6 | 6619487-6816224 | C | 4.91 | 10.3 | −0.55 | 5.92 | 18.4 | −0.72 | 5.01 | 14.4 | 0.66 | 4.81 | 13.9 | 0.64 | |
qPL7.1 | 7 | id7003853-id7004922 | I |  |  |  | 2.84 | 8.4 | 0.49 | 3.29 | 9.7 | −0.56 | 3.62 | 10.7 | −0.58 | |
qPL9.1 | 9 | 9592671-9869869 | I |  |  |  | 3.36 | 20.4 | 0.73 | 3.27 | 9.7 | −0.83 | 2.92 | 8.7 | −0.73 | |
PN | qPN1.1 | 1 | 147907-395936 | I |  |  |  | 2.55 | 7.6 | 0.39 | 3.49 | 10.3 | −0.55 | 3.16 | 9.4 | −0.55 |
qPN3.1 | 3 | 2573346-2610698 | I |  |  |  | 2.88 | 8.9 | 0.43 | 2.74 | 8.2 | −0.47 | 2.83 | 8.4 | −0.44 | |
BM | qBM1.1 | 1 | 147907-275443 | I | 3.92 | 10.2 | 51.73 | 2.44 | 72.0 | 43.16 | 3.68 | 10.8 | −50.83 | 2.30 | 6.9 | −42.4 |
qBM3.1 | 3 | 2499734-2560888 | C | 2.89 | 7.0 | −45.20 |  |  |  | 3.33 | 9.9 | 49.64 |  |  |  |