Fig. 2
From: Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice
GWAS mapping of rice cold tolerance at seedling stage (CTS). a The Manhattan plots of CTS on rice chromosomes analyzed with the data of the RPD1 rice accessions. X-axis is the genomic coordinates. Y-axis is the LOD score for each SNP. b The corresponding Q-Q plots for GWAS mapping. c The average allele frequency of the 181 significant SNPs in the 40 highly tolerant and the 19 extremely sensitive rice cultivars. X-axis is the tolerant or sensitive rice group and Y-axis means the average SNP frequency of the corresponding allele genotype. T is tolerant associated SNP genotype, S represents sensitive SNP genotype, NA means unknown genotype