Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Rice

Table 2 Number of SNPs per chromosome selected in each rice cultivar and number of non-redundant SNPs. The Nipponbare genome was used as the reference genome

	Arroz da Terra	Bahia	Bomba	Gigante Vercelli	Gleva	Italica Livorno	Kalao	L-202	Loto	LTH	M-202	Pavlovski	Puntal	Senia	Total non-redundant SNPs
chr01	81	96	61	87	76	89	101	105	65	56	95	58	108	77	321
chr02	71	54	36	61	53	62	57	55	42	45	50	60	61	55	259
chr03	60	49	56	56	34	54	74	74	63	50	38	44	65	48	281
chr04	53	34	63	56	35	42	65	71	56	64	44	45	56	41	248
chr05	42	45	53	49	54	50	71	74	63	53	60	50	66	59	218
chr06	52	37	52	52	52	69	52	55	57	55	37	48	62	53	225
chr07	61	27	54	39	25	48	64	57	59	53	50	46	34	23	199
chr08	54	28	60	53	59	49	63	69	45	46	61	28	62	30	211
chr09	39	16	41	39	19	38	49	52	17	37	19	27	44	16	163
chr10	34	46	58	42	43	31	41	41	48	36	45	35	52	44	179
chr11	35	32	44	40	27	31	45	47	27	39	39	38	45	24	200
chr12	38	38	52	59	55	49	59	61	34	45	50	24	64	41	194
Total	620	502	630	633	532	612	741	761	576	579	588	503	719	511	2.698