High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Rice

Table 3 QTLs associated with chalkiness traits detected in the different environments

Trait	Chromosome	Peak Position (cM)	Interval (cM)		Left Marker	Right Marker	LOD	PVE (%)^a	Add^b	Environment
PGWC	2	168	167.52	169.65	mk473	mk475	3.165	5.594	−7.291	Z-DS
	4	113	111.78	113.37	mk998	mk1000	7.035	12.975	−10.997	Z-DS
	4	135	134.51	136.37	mk1005	mk1007	5.635	9.738	−9.579	G-DS
	5	13	9.76	14.4	mk1153	mk1155	2.638	4.971	−8.125	G-WS
	5	35	34.39	35.18	mk1174	mk1175	5.250	8.985	−8.999	G-DS
	5	60	56.09	61.75	mk1189	mk1191	6.347	11.890	−10.337	Z-DS
	5	60	56.09	61.75	mk1189	mk1191	4.007	8.143	−9.706	G-WS
	5	84	83.81	85.4	mk1228	mk1230	2.773	5.182	−8.332	G-WS
	6	55	54.62	56.51	mk1378	mk1379	3.002	5.819	−8.807	G-WS
	6	78	77.75	78.01	mk1408	mk1409	2.568	4.457	−6.255	Z-DS
	7	132	130.52	132.94	mk1743	mk1745	3.662	7.123	−7.934	Z-DS
	7	134	133.2	134.53	mk1746	mk1747	2.946	4.763	−6.593	G-DS
	8	1	0.53	1.85	mk1786	mk1789	4.804	9.866	−10.693	Z-WS
	8	4	1.85	3.46	mk1789	mk1791	4.076	6.701	−7.893	G-DS
	8	17	16.85	17.11	mk1803	mk1804	4.580	8.645	−10.740	G-WS
	9	108	107.39	108.72	mk2078	mk2079	2.642	5.430	−7.888	Z-WS
DEC	4	110	109.95	110.21	mk991	mk992	3.016	6.342	−3.745	Z-WS
	4	136	134.51	136.37	mk1005	mk1007	3.779	7.760	−2.188	G-DS
	5	18	17.86	21.8	mk1160	mk1161	3.589	5.831	−4.473	G-WS
	5	35	34.39	35.18	mk1174	mk1175	3.354	6.847	−2.014	G-DS
	5	60	56.09	61.75	mk1189	mk1191	3.660	8.462	−1.813	Z-DS
	5	61	56.09	61.75	mk1189	mk1191	3.516	7.464	−4.003	G-WS
	6	23	22.67	23.19	mk1339	mk1340	2.516	5.391	−3.390	Z-WS
	6	64	63.57	65.46	mk1387	mk1388	7.378	12.779	−6.611	G-WS
	7	134	133.2	134.53	mk1746	mk1747	3.610	6.532	−0.015	Z-WS
	8	6	5.87	8.33	mk1792	mk1793	6.002	10.074	−5.931	G-WS
	8	130	129.72	130.24	mk1924	mk1925	3.411	7.027	−2.046	G-DS