Table 2 Primer sequences of newly developed SNP markers
From: High-density mapping of quantitative trait loci for grain-weight and spikelet number in rice
Marker name | Forward primer (5’-3’) | Reverse primer (5’-3’) | Position | Product size (bp) |
|---|---|---|---|---|
InDel-1 | GAGAAAGTGACCCTCGTTTAGT | CAAGACATGACACTACGATTGC | 27,565,623 – 27,565,899 | 276 |
SNP1 | CCATATGATTAAATGGGAGGCTC | ACATAGGCACTGCCAAGGTTC | 27,572,630 – 27,572,896 | 266 |
SNP2 | ACGGACGCCTGCTATAGGGA | CACCAGAGGCGATCTTCTTC | 27,585,994 – 27,586,360 | 366 |
SNP3 | GAATATCACGATCAAAGAACTTG | GTTACTCTAATATGATAATATGCC | 27,603,470 – 27,603,822 | 352 |