Figure 5
Comparison of gene responses to various stress factors in rice. Cold: 10°C; PEG: 25% polyethylene glycol 600; Mannitol: 260 mM mannitol; NaCl: 150 mM NaCl; Ozone: 0.2 ppm ozone; Blast: infection with Magnaporthe grisea; WBPH: infestation with whitebacked planthopper. The GEO IDs for these transcriptome datasets are GSE2415, 7532, 8811, 9450, and 11157. Red and green colors indicate up- and down-regulation of gene expression, respectively. Numbers represent the log2 ratio (signal intensity of the treated sample/signal intensity of the control sample). a): NADPH oxidase, b): germin, c) lipoxygenase(LOX) and allene oxide synthase (AOS), d): JAZ(TIFY), e): AP2/EREBP, f): WRKY, and g) chitinase. The gene list of each category is based on KEGG ontology (Kanehisa et al. [2012]), Plant transcription factor database (Zhang et al. [2011]) and MSU OSA1 (Ouyang et al. [2007]), and the gene list in e)-g) is only fog-treatment responded gene. Original data are in Additional file 3: Table S2.