A. Genetic diversity | |||||||||
---|---|---|---|---|---|---|---|---|---|
Population | Nucleus | Chloroplast | |||||||
No. of samples | Gene diversity | Allelic richness | No. of samples | Gene diversity | Allelic richness | ||||
DPRK | Group1 | 63 | 0.304 | 2.007 | 62 | 0.134 | 1.466 | ||
Group2 | 8 | 0.441 | 2.240 | 6 | 0.046 | 1.083 | |||
admixed | 10 | 0.454 | 2.418 | 10 | 0.255 | 1.674 | |||
Mini-Rice Diversity Panel | temperate japonica | 10 | 0.280 | 1.912 | 9 | 0.113 | 1.248 | ||
tropical japonica | 11 | 0.385 | 2.312 | 11 | 0.152 | 1.459 | |||
aromatic | 5 | 0.331 | 1.742 | 5 | 0.246 | 1.457 | |||
indica | 9 | 0.522 | 2.722 | 9 | 0.293 | 1.734 | |||
aus | 10 | 0.470 | 2.486 | 10 | 0.207 | 1.640 | |||
B. Pairwise Fst and Rst based on nSSRs ♩ | |||||||||
Model based group | Group1 | Group2 | admixed | temperate japonica | tropical japonica | aromatic | indica | aus | |
DPRK | Group1 | 0 | 0.15698* | 0.02852 | 0.31672** | 0.30472** | 0.28058* | 0.44312** | 0.43371** |
Group2 | 0.44127** | 0 | 0.06471 | 0.46329** | 0.43001** | 0.41775** | 0.32082** | 0.44695** | |
admixed | 0.13387** | 0.27433** | 0 | 0.41645** | 0.41255** | 0.3671** | 0.42727** | 0.49235** | |
Mini-Rice Diversity Panel | temperate japonica | 0.17589** | 0.50115** | 0.24504** | 0 | 0.36977** | 0.39332** | 0.55988** | 0.51885** |
tropical japonica | 0.42686** | 0.42243** | 0.36964** | 0.44131** | 0 | 0.37587** | 0.50219** | 0.44887** | |
aromatic | 0.56358** | 0.55827** | 0.49773** | 0.62088** | 0.39265** | 0 | 0.61571** | 0.52853** | |
indica | 0.59369** | 0.33043** | 0.41700** | 0.57704** | 0.50522** | 0.55020** | 0 | 0.39948** | |
aus | 0.60742** | 0.43762** | 0.47938** | 0.60109** | 0.49746** | 0.49755** | 0.35632** | 0 | |
C. Pairwise Fst based on chloroplast haplotype | |||||||||
Model based group | Group1 | Group2 | admixed | temperate japonica | tropical japonica | aromatic | indica | aus | |
DPRK | Group1 | 0 | |||||||
Group2 | 0.12911 | 0 | |||||||
admixed | 0.01667 | 0.15174 | 0 | ||||||
Mini-Rice Diversity Panel | temperate japonica | 0.02233 | 0.10224 | −0.05469 | 0 | ||||
tropical japonica | 0.31411** | 0.46612** | 0.18716** | 0.2543** | 0 | ||||
aromatic | 0.41235** | 0.63359** | 0.26113** | 0.34396** | 0.14715* | 0 | |||
indica | 0.42547** | 0.61186** | 0.22359** | 0.38889** | 0.16664* | 0.27747** | 0 | ||
aus | 0.42271** | 0.60000** | 0.21509** | 0.38722** | 0.21908** | 0.24837** | 0 | 0 |