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Rice

Table 2 Representative QTLs Classified by Trait Category

From: Q-TARO: QTL Annotation Rice Online Database

Trait category 1

Trait category 2

Interval

Chromosome

Clone/locus

1–100 kb

100 kb–1 Mb

1–10 Mb

>10 Mb

No intervala

1

2

3

4

5

6

7

8

9

10

11

12

 

Morphological traits

Root

1

4

14

30

2

9

10

6

7

15

4

5

1

1

7

1

3

 

60

Shoot/seedling

 

1

6

15

4

5

5

1

12

3

6

3

  

1

   

31

Culm/leaf

3

 

10

34

5

14

16

6

6

6

3

10

8

2

8

1

  

66

Panicle/flower

1

1

20

63

10

16

26

7

14

19

6

16

5

4

4

7

2

1

111

Seed

3

1

12

46

8

23

17

11

18

7

7

18

3

3

3

3

1

2

93

Dwarf

5

 

6

16

3

17

15

3

4

3

3

5

3

1

1

1

4

4

47

Physiological traits

Germination/dormancy

  

2

8

 

7

1

1

4

1

4

 

3

1

1

  

1

17

Flowering

12

 

3

16

7

11

1

2

9

  

12

11

7

1

5

1

 

49

Source activity

  

4

32

6

22

12

6

8

8

6

11

4

4

4

 

1

 

64

Sterility

5

 

10

16

3

11

5

6

3

1

3

5

4

2

 

13

1

2

45

Lethality

   

5

 

1

 

2

    

1

  

1

2

 

6

Eating quality

3

1

24

36

9

10

4

13

7

4

8

29

5

4

2

1

2

4

83

Resistance or tolerance

Blast resistance

3

 

7

9

1

25

5

9

3

3

2

7

 

3

1

5

3

4

45

Other disease resistance

4

 

5

10

 

8

2

2

4

2

2

1

2

2

3

 

5

2

27

Insect resistance

1

 

3

11

1

12

4

3

4

3

3

5

1

2

 

1

 

2

28

Cold tolerance

3

 

4

15

1

2

2

3

1

4

1

2

3

3

2

 

2

2

25

Drought tolerance

 

3

21

64

3

20

16

9

21

11

3

4

4

4

11

7

7

14

111

Soil stress tolerance

 

1

18

45

11

2

30

5

6

5

2

6

3

7

2

3

2

6

77

Submergence tolerance

   

12

 

7

2

 

2

     

6

 

1

8

19

Other stress tolerance

1

  

6

2

2

1

 

3

  

1

1

2

 

3

  

11

Other

Other

5

1

6

11

 

13

15

5

3

1

 

3

2

1

1

1

1

3

36

  

50

13

175

500

76

237

190

102

142

100

68

149

71

61

67

63

49

67

1,051

  1. aPosition was determined using only one marker, so no interval could be defined
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