Deep and Comparative Transcriptome Analysis of Rice Plants Infested by the Beet Armyworm (Spodoptera exigua) and Water Weevil (Lissorhoptrus oryzophilus)

Rice

Table 2 Classification of the Reliable MPSS Signatures from PLA, PLW, and PLC Libraries Based on their Location on the Annotated Genes

Signature category^b	PLA		PLW		PLC		NLD		SPLW
Signature category^b	Total signatures	Grouped by gene^a	Total signatures	Grouped by gene^a	Total signatures	Grouped by gene^a	Total signatures	Grouped by gene^a	Total signatures	Grouped by gene^a
Class 1 (exon, sense strand)	5,335	4,707	5,861	5,161	5,206	4,534	5,758	5,090	5,868	5,250
Class 2 (500 bp 3′-UTR)	5,263	4,673	5,314	4,746	5,020	4,483	4,825	4,368	11,490	9,053
Class 3 (exon, antisense strand)	1,862	1,635	1,836	1,628	1,771	1,559	1,471	1,336	3,634	3,044
Class 4 (un-annotated region)	825	0	872	0	819	0	857	0	2,858	0
Class 5 (intron, sense strand)	404	383	498	473	412	390	485	452	2,095	1,781
Class 6 (Intron, antisense strand)	163	160	172	165	154	149	113	110	425	398
Class 7 (span splice site, sense strand)	180	178	185	183	141	139	173	171	337	328
Classes 1, 2, 5, 7 (Sense signatures)	11,182	8,786	11,858	9,284	10,779	8,407	11,241	8,935	19,790	13,813
Classes 3, 6 (antisense signatures)	2,025	1,769	2,008	1,773	1,925	1,691	1,584	1,432	4,059	3,378
Total	21,365	9,469	20,282	10,013	18,202	9,097	20,791	9,558	26,707	14,301