From: Genetic Analysis of Water Use Efficiency in Rice (Oryza sativa L.) at the Leaf Level
QTLa | Chr | Marker interval flanking peakb | Position cM (confidence interval) | Pop | QTL clusterc | LOD score thresholdd | LOD score | R 2e | a f | ANOVA |
---|---|---|---|---|---|---|---|---|---|---|
Δ13C4.1_E2 | 4 | RM280–RM567 | 131.2 (122.3–134.7) | DH | 4-C | 3.25 | 4.21 | 0.13 | −0.138 | –g |
Δ13C4.1_E3 | 4 | RM518–RM261 | 17.7 (11.7–29.2) | RIL | 4-A | 3.11 | 3.08 | 0.08 | 0.137 | –h |
Δ13C 4.1_E4 | 4 | RM307–RM185 | 27.2 (24.1–31.2) | RIL | 4-A | 3.17 | 5.23 | 0.11 | 0.193 | –i |
Δ13C 4.2_E3 | 4 | RM252–RM241 | 89.1 (85.9–93.1) | RIL | 4-B | 3.11 | 3.73 | 0.08 | −0.140 | –j |
Δ13C4.2_E4 | 4 | RM317–RM349 | 124.5 (118.5–127.7) | RIL | 4-C | 3.17 | 4.51 | 0.11 | −0.190 | –g |
Δ 13 C5.1_E1 | 5 | RZ67 | 108.3 | DH | 5-A | 3.30 | 1.89 | 0.10 | 0.175 | –i |
Δ13C 5.1_E2 | 5 | RM459–RM161 | 87.8 (81.9–92.9) | DH | 5-A | 3.25 | 5.71 | 0.19 | 0.165 | –g |
Δ13C 5.1_E3 | 5 | RM440–RM188 | 113.3 (103.0–119.3) | RIL | 5-A | 3.11 | 5.76 | 0.15 | 0.186 | –i |
Δ13C 5.1_E4 | 5 | RM440–RM188 | 107.0 (101.0–119.3) | RIL | 5-A | 3.17 | 5.07 | 0.13 | 0.202 | –g |
Δ13C8.1_E1 | 8 | RM547–RM72 | 54.4 (49.7–58.4) | DH | 8-A | 3.3 | 3.38 | 0.15 | 0.207 | –i |
Δ 13 C8.1_E4 | 8 | RM342b | 77.24 | RIL | 8-A | 3.17 | 3.05 | 0.06 | 0.138 | –g |
%N1.1_E3 | 1 | RM431–RM165 | 209.8 (204.1–213.8) | RIL | 1-C | 3.11 | 7.09 | 0.20 | −0.157 | –i |
%N1.1_E4 | 1 | RM165–RM14 | 224.0 (209.8–230.0) | RIL | 1-C | 3.19 | 3.26 | 0.09 | −0.105 | –j |
%N2.1_E1 | 2 | RM492–RM452 | 62.8 (60.5–68.5) | DH | 2-B | 3.42 | 3.74 | 0.19 | 0.117 | –g |
%N2.1_E2 | 2 | RG437–RM492 | 61.5 (60.5–71.3) | DH | 2-B | 3.11 | 4.90 | 0.15 | 0.129 | –g |
%N5.1_E3 | 5 | RM440–RM188 | 105.0 (101.0–117.3) | RIL | 5-A | 3.11 | 5.65 | 0.18 | 0.147 | –i |
%N10.1_E2 | 10 | RG257–RM467 | 35.7 (29.7–47.0) | DH | 10-A | 3.11 | 3.96 | 0.13 | 0.114 | –j |
%N11.1_E2 | 11 | RM116–RM441 | 43.0 (40.0–49.0) | DH | 11-A | 3.11 | 3.59 | 0.11 | 0.102 | –g |
SLA1.1_E3 | 1 | RM431–RM165 | 207.8 (204.1–213.8) | RIL | 1-C | 3.17 | 3.19 | 0.06 | −0.510 | –j |
SLA4.1_E4 | 4 | RM518–RM261 | 17.2 (13.7–25.2) | RIL | 4-A | 3.21 | 5.30 | 0.15 | −1.046 | –g |
SLA5.1_E1 | 5 | RM459–RM161 | 86.5 (81.9–89.8) | DH | 5-A | 3.42 | 5.27 | 0.19 | −1.008 | –j |
SLA5.1_E2 | 5 | RM459–RM161 | 87.8 (81.9–89.8) | DH | 5-A | 3.30 | 6.30 | 0.23 | −0.963 | –i |
SLA5.1_E3 | 5 | RM440–RM188 | 97.0 (94.2–101.0) | RIL | 5-A | 3.17 | 7.15 | 0.16 | −0.800 | –i |
SLA9.1_E3 | 9 | RM257–RM242 | 62.0 (60.4–64.0) | RIL | 9-A | 3.17 | 6.07 | 0.13 | 0.730 | –g |
SLA12.1_E3 | 12 | RM309–RM7018 | 71.9 (69.5–81.8) | RIL | 12-A | 3.17 | 3.59 | 0.07 | −0.530 | –h |
SB1.1_E1 | 1 | RG331–RM568 | 206.1 (205.6–206.1) | DH | 1-C | 3.45 | 6.45 | 0.29 | 0.249 | –i |
SB1.1_E2 | 1 | RG331–RM568 | 206.1 (205.6–206.1) | DH | 1-C | 3.33 | 7.33 | 0.22 | 0.194 | –i |
SB11.1_E2 | 11 | RM167–RG118 | 34.1 (31.6–38.4) | DH | 11-A | 3.33 | 4.30 | 0.13 | −0.159 | –j |
SB12.1_E2 | 12 | RG901–RM270 | 90.5 (84.7–98.2) | DH | 12-B | 3.33 | 4.50 | 0.12 | 0.147 | –j |
LW2.1_E3 | 2 | RM475–RM5430 | 79.2 (73.9–83.6) | RIL | 2-D | 3.05 | 3.80 | 0.08 | 0.403 | –g |
LW2.1_E4 | 2 | RM452–RM324 | 39.0 (32.7–43.0) | RIL | 2-B | 3.05 | 3.40 | 0.06 | 0.435 | |
LW4.1_E2 | 4 | RG214–RG143 | 118.3 (112.3–122.3) | DH | 4-C | 3.38 | 7.30 | 0.21 | 0.454 | –g |
LW4.1_E3 | 4 | RM307–RM185 | 25.2 (24.1–27.2) | RIL | 4-A | 3.02 | 7.77 | 0.18 | −0.607 | –i |
LW4.1_E4 | 4 | RM307–RM185 | 25.2 (24.1–27.1) | RIL | 4-A | 3.05 | 15.91 | 0.31 | −1.014 | –i |
LW4.2_E4 | 4 | RM317–RM349 | 122.5 (118.5–127.8) | RIL | 4-C | 3.05 | 5.32 | 0.12 | 0.624 | –j |
LW5.1_E4 | 5 | RM163–RM440 | 92.2 (88.2–107.0) | RIL | 5-A | 3.05 | 3.46 | 0.07 | −0.469 | –h |
LW12.1_E2 | 12 | RM17–RG181 | 110.5 (92.2–112.5) | DH | 12-B | 3.38 | 4.52 | 0.12 | 0.348 | –g |
LL1.1_E3 | 1 | RM472–RM431 | 204.1 (199.8–213.8) | RIL | 1-C | 3.17 | 3.20 | 0.08 | 1.082 | –j |
LL1.1_E4 | 1 | RM472–RM431 | 206.1 (202.1–211.8) | RIL | 1-C | 3.05 | 5.81 | 0.13 | 3.311 | –g |
LL2.1_E2 | 2 | RM497–RM6 | 163.3 (159.3–168.4) | DH | 2-E | 3.15 | 6.74 | 0.17 | −1.578 | –g |
LL2.1_E4 | 2 | RM250–RM166 | 125.7 (115.1–129.4) | RIL | 2-E | 3.05 | 3.45 | 0.07 | −2.430 | –j |
LL3.1_E2 | 3 | RM514–RM570 | 236.0 (228.3–244.4) | DH | 3-C | 3.15 | 3.96 | 0.10 | 1.218 | –g |
LL3.1_E3 | 3 | RM143–RM514 | 200.5 (190.5–203.2) | RIL | 3-C | 3.17 | 3.56 | 0.09 | 2.320 | –i |
LL3.1_E4 | 3 | RM143–RM514 | 194.5 (186.5–200.5) | RIL | 3-C | 3.05 | 5.64 | 0.14 | 3.391 | –i |
LL12.1_E3 | 12 | RM6123–RM17 | 114.0 (106.0–114.0) | RIL | 12-B | 3.17 | 5.27 | 0.13 | 2.586 | –g |
LL12.1_E4 | 12 | RM6123–RM17 | 110.0 (104.0–114.0) | RIL | 12-B | 3.05 | 4.41 | 0.11 | 2.999 | –g |
TN1.1_E2 | 1 | RM472–RM431 | 190.9 (187.3–198.9) | DH | 1-C | 3.23 | 5.13 | 0.17 | 1.082 | –j |
TN2.1_E3 | 2 | RM263–RM526 | 91.7 (83.7–94.0) | RIL | 2-D | 3.22 | 3.45 | 0.08 | −0.663 | –g |
TN2.1_E4 | 2 | RM550–RM465C | 45.6 (39.0–47.6) | RIL | 2-B | 3.11 | 4.87 | 0.09 | −1.177 | –i |
TN2.2_E4 | 2 | RM5651–RM106 | 81.6 (79.1–85.6) | RIL | 2-D | 3.11 | 4.11 | 0.08 | −1.086 | –i |
TN8.1_E3 | 8 | RM433–RM281 | 128.9 (124.9–132.9) | RIL | 8-B | 3.22 | 6.53 | 0.17 | −1.000 | –i |
TN8.1_E4 | 8 | RM433–RM281 | 130.9 (126.9–132.9) | RIL | 8-B | 3.11 | 5.93 | 0.14 | −1.507 | –i |
LF1.1_E2 | 1 | RM543–RM302 | 153.0 (146.8–155.0) | DH | 1-B | 3.29 | 4.42 | 0.12 | 0.223 | –h |
LF1.1_E4 | 1 | RM200–RM319 | 177.1 (173.1–180.8) | RIL | 1-B | 3.08 | 4.33 | 0.07 | 0.226 | –i |
LF2.1_E4 | 2 | RM561–RM341 | 57.1 (51.3–63.9) | RIL | 2-C | 3.08 | 3.59 | 0.06 | 0.200 | –i |
LF3.1_E2 | 3 | RM156–RM411 | 134.6 (128.4–136.6) | DH | 3-A | 3.29 | 5.56 | 0.13 | −0.233 | –i |
LF5.1_E2 | 5 | CDO105–RZ649 | 78.9 (76.9–89.8) | DH | 5-A | 3.29 | 8.03 | 0.28 | 0.335 | –i |
LF5.1_E4 | 5 | RM163–RM440 | 101.0 (97.0–107.0) | RIL | 5-A | 3.08 | 9.55 | 0.22 | 0.388 | –i |
LF11.1_E4 | 11 | RM332–RM167 | 14.0 (9.8–18.0) | RIL | 11-A | 3.08 | 3.49 | 0.06 | 0.196 | –i |
LE3.1_E2 | 3 | RM168–RM520 | 190.7 (179.2–202.8) | DH | 3-B | 3.22 | 4.28 | 0.17 | 0.231 | –j |
LE4.1_E4 | 4 | RM518–RM261 | 17.7 (13.7–27.2) | RIL | 4-A | 3.20 | 3.84 | 0.10 | 0.201 | –j |
LE5.1_E4 | 5 | RM440–RM188 | 111.2 (105.0–119.3) | RIL | 5-A | 3.20 | 3.87 | 0.08 | −0.178 | –g |
LE6.1_E2 | 6 | RM528–RM30 | 129.9 (129.2–139.6) | DH | 6-A | 3.22 | 5.32 | 0.16 | −0.227 | –g |
LE6.1_E4 | 6 | RM275–RM30 | 86.5 (80.5–102.5) | RIL | 6-A | 3.20 | 3.59 | 0.09 | −0.193 | –j |
A/m24.1_E3 | 4 | RM518–RM261 | 19.7 (13.7–24.1) | RIL | 4-A | 3.17 | 4.37 | 0.14 | 1.019 | –i |
A/m24.1_E4 | 4 | RM518–RM261 | 19.7 (17.7–24.1) | RIL | 4-A | 3.09 | 8.17 | 0.16 | 1.290 | –i |
Ci/Ca1.1_E4 | 1 | RM265–RM315 | 184.6 (180.3–190.6) | RIL | 1-C | 3.15 | 3.28 | 0.07 | 2.536 | –g |
Ci/Ca2.1_E3 f | 2 | RM423 | 16.2 | RIL | 2-A | 3.20 | 2.77 | 0.08 | −3.077 | –j |
Ci/Ca2.1_E4 | 2 | RM423–RM555 | 18.3 (11.3–22.7) | RIL | 2-A | 3.15 | 3.47 | 0.08 | −2.704 | –g |
Ci/Ca4.1_E4 f | 4 | RM518 | 15.7 | RIL | 4-A | 3.15 | 2.69 | 0.08 | 2.600 | –j |
SCO1.1_E4 | 1 | RM034–RM246 | 133.5 (129.5–140.5) | RIL | 1-A | 3.03 | 4.47 | 0.13 | 0.039 | –g |
SCO4.1_E4 | 4 | RM518–RM261 | 17.7 (15.7–27.2) | RIL | 4-A | 3.03 | 8.32 | 0.19 | 0.048 | –i |
lABA4.1_E4 | 4 | RM307–RM185 | 25.2 (24.1–29.2) | RIL | 4-A | 3.02 | 3.11 | 0.07 | −0.070 | –j |
lABA12.1_E3 | 12 | RM270–RM235 | 100.4 (94.4–108.0) | RIL | 12-B | 3.02 | 4.09 | 0.13 | 0.130 | –j |