From: Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution
Species/subspecies variety/accession genome | Origin | Entire region (bp) | Intron (bp) | Exon (bp) | Peptide (a. a.) | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | SNPs | Indel | Total | SNPs | Indel | Total | Matching (%) | |||||
O. sativa ssp. japonica | Nipponbare | AA | Japan | 2,743 | 1,573 | – | – | 1,170 | – | – | 389 | – |
Khau Mac Kho | AA | Vietnam | 2,744 | 1,574 | 0 | 1 | 1,170 | 0 | 0 | 389 | 100 | |
O. sativa ssp. Indica | Kasalath | AA | India | 2,717 | 1,547 | 8 | 30 (7) | 1,170 | 2 (2) | 0 | 389 | 99.5 |
Shuusoushu | AA | China | 2,719 | 1,549 | 8 | 28 (6) | 1,170 | 3 (2) | 0 | 389 | 99.5 | |
93-11 | AA | China | 2,720 | 1,550 | 13 | 27 (5) | 1,170 | 4 (3) | 0 | 341a | 99.2 | |
O. rufipogon | W0106 | AA | India | 2,740 | 1,570 | 7 | 5 (3) | 1,170 | 2 (2) | 0 | 389 | 99.5 |
W0574 | AA | Malaysia | 2,720 | 1,550 | 8 | 29 (7) | 1,170 | 2 (2) | 0 | 389 | 99.5 | |
W1943 | AA | China | 2,744 | 1,574 | 8 | 1 | 1,170 | 2 (2) | 0 | 389 | 99.5 | |
O. glaberrima | IRGC104038 | AA | Senegal | 2,683 | 1,513 | 10 | 64 (4) | 1,170 | 6 (2) | 0 | 389 | 99.5 |
O. barthii | W1588 | AA | Cameroon | 2,682 | 1,512 | 10 | 65 (5) | 1,170 | 6 (2) | 0 | 389 | 99.5 |
O. glumaepatura | IRGC105688 | AA | Brazil | 2,681 | 1,511 | 26 | 72 (8) | 1,170 | 8 (3) | 0 | 389 | 99.2 |
O. meridionalis | W1625 | AA | Australia | 2,793 | 1,605 | 116 | 188 (26) | 1,185 | 13 (5) | 15 (1) | 394 | 97.7 |
O. longistaminata | W1413 | AA | Sierra Leone | 2,752 | 1,567 | 65 | 88 (18) | 1,188 | 7 (2) | 18 (1) | 395 | 98.0 |
O. punctata | IRGC105690 | BB | Bangladesh | 2,466 | 1,290 | 145 | 695 (47) | 1,176 | 51 (17) | 26 (5) | 391 | 94.4 |
O. minuta | IRGC101141 | BBCC | Philippines | 2,987 | 1,802 | 255 | 555 (51) | 1,185 | 55 (23) | 29 (5) | 394 | 92.4 |
O. officinalis | IRGC100896 | CC | Thailand | 2,831 | 1,634 | 199 | 667 (46) | 1,197 | 52 (21) | 33 (4) | 398 | 92.7 |
O. alta | IRGC105143 | CCDD | S. America | 2,546 | 1,322 | 153 | 691 (49) | 1,224 | 63 (27) | 62 (6) | 407 | 89.2 |
O. brachyantha | IRGC101232 | FF | Africa | 2,787 | 1,590 | 456 | 577 (60) | 1,197 | 100 (35) | 39 (5) | 398 | 88.5 |
O. granulata | IRGC102118 | GG | Thailand | 2,464 | 1,294 | 292 | 671 (54) | 1,170 | 103 (41) | 42 (4) | 389 | 88.0 |